PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g004250.1
Common NameMTR_6g004250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 80aa    MW: 9011.05 Da    PI: 6.799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g004250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-11956348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +W  e+ + + +a + + ++   +W  Ia+ +g g+t++q+ks++q +l
  Medtr6g004250.1  9 AWNVEDNKAFERALAVYDKDtpeRWYNIAKVVG-GKTPEQVKSHYQLLL 56
                     7********************************.************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.301560IPR017884SANT domain
SMARTSM007171.2E-9658IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-13864IPR009057Homeodomain-like
PfamPF002499.9E-9955IPR001005SANT/Myb domain
CDDcd001671.40E-9956No hitNo description
Gene3DG3DSA:1.10.10.602.9E-53057IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSYSSSSTAW NVEDNKAFER ALAVYDKDTP ERWYNIAKVV GGKTPEQVKS HYQLLLQDIH  60
LIESGQVPFP SYTNPKHPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30272373RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450717.13e-54transcription factor radialis-like protein
SwissprotQ58FS34e-31RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A072UG343e-54A0A072UG34_MEDTR; Transcription factor radialis-like protein
STRINGGLYMA02G18210.14e-31(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-31RAD-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]